Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3893

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12260 and 12261 are separated by 270 nucleotides12261 and 12262 are separated by 383 nucleotides mRNA_3892: 12260 - Hypothetical Protein, at 837,987 to 839,368 12260 mRNA_3893: 12261 - K07375 TUBB tubulin beta, at 839,639 to 842,065 12261 mRNA_3894: 12262 - SUPERFAMILY--SSF54695, at 842,449 to 843,578 12262

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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838,801 - 12260 mRNA_3892 0.59 +0.2
838,911 - 12260 mRNA_3892 0.67 +0.1
838,921 + 12260 mRNA_3892 0.68 +0.6
839,189 + 12260 mRNA_3892 0.87 -0.5
839,215 - 12260 mRNA_3892 0.89 -0.5
839,218 + 12260 mRNA_3892 0.89 +0.1
839,255 + +0.9
839,642 - +0.5
839,682 + -0.5
839,911 + 12261 mRNA_3893 0.11 +1.7
840,039 + 12261 mRNA_3893 0.16 +0.8
840,957 + 12261 mRNA_3893 0.54 -0.1
840,970 - 12261 mRNA_3893 0.55 +0.2
841,210 + 12261 mRNA_3893 0.65 -0.8
841,210 + 12261 mRNA_3893 0.65 +0.8
841,268 + 12261 mRNA_3893 0.67 +0.2
841,690 + 12261 mRNA_3893 0.85 -1.3
841,839 - -0.9
841,853 + +0.6
842,129 - -0.3
842,143 + +1.4
842,151 + +0.8
842,165 + -1.2
842,169 + +1.0
842,172 + +0.4
842,750 + 12262 mRNA_3894 0.27 +1.1
842,769 + 12262 mRNA_3894 0.28 +0.3
842,850 + 12262 mRNA_3894 0.35 +0.7
842,899 + 12262 mRNA_3894 0.40 +0.8

Or see this region's nucleotide sequence