Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3904

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12271 and 12272 are separated by 49 nucleotides12272 and 12273 are separated by 619 nucleotides mRNA_3903: 12271 - K01273 DPEP membrane dipeptidase, at 857,570 to 859,111 12271 mRNA_3904: 12272 - KOG1176 Acyl-CoA synthetase, at 859,161 to 861,426 12272 mRNA_3905: 12273 - KOG0118 FOG RRM domain, at 862,046 to 863,996 12273

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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858,266 - 12271 mRNA_3903 0.45 +0.6
858,291 + 12271 mRNA_3903 0.47 -0.9
858,294 - 12271 mRNA_3903 0.47 -0.6
858,744 + 12271 mRNA_3903 0.76 +0.8
858,795 + 12271 mRNA_3903 0.79 -0.6
859,010 + -2.8
859,262 - +0.6
859,540 - 12272 mRNA_3904 0.17 -1.9
859,617 + 12272 mRNA_3904 0.20 -0.3
859,736 - 12272 mRNA_3904 0.25 -0.4
859,751 - 12272 mRNA_3904 0.26 -0.1
859,759 + 12272 mRNA_3904 0.26 -0.0
860,077 - 12272 mRNA_3904 0.40 -0.1
860,186 - 12272 mRNA_3904 0.45 -1.6
860,318 + 12272 mRNA_3904 0.51 -0.2
860,630 - 12272 mRNA_3904 0.65 +0.1
860,745 - 12272 mRNA_3904 0.70 -0.9
860,889 + 12272 mRNA_3904 0.76 -0.4
860,954 + 12272 mRNA_3904 0.79 -0.1
860,963 + 12272 mRNA_3904 0.80 +1.1
861,071 - 12272 mRNA_3904 0.84 +0.5
861,499 - -0.4
861,702 + +0.3
862,112 - +1.6
862,377 + 12273 mRNA_3905 0.17 +0.8

Or see this region's nucleotide sequence