Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3921

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12289 and 12290 are separated by 442 nucleotides mRNA_3921: 12289 - Hypothetical Protein, at 910,029 to 911,741 12289 mRNA_3922: 12290 - K11099 SNRPG, SMG small nuclear ribonucleoprotein G, at 912,184 to 912,720 12290

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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909,062 + +1.1
909,070 - +0.1
909,078 - +0.9
909,080 - +0.0
909,141 + -0.5
909,237 - +0.2
909,367 + +0.5
909,390 - +0.4
909,407 + +0.9
909,507 + -0.1
909,519 - +1.5
909,519 - +1.3
909,560 + +0.3
909,657 + -3.0
909,820 - +1.7
909,994 + +1.4
910,840 - 12289 mRNA_3921 0.47 -0.4
911,122 - 12289 mRNA_3921 0.64 +0.5
911,139 + 12289 mRNA_3921 0.65 -0.2
911,145 + 12289 mRNA_3921 0.65 -0.6
911,803 + -0.7
911,979 + +0.2
911,984 - -2.1
911,987 + +0.8
912,009 + -0.3
912,110 + +0.4
912,116 - -0.6
912,119 - +0.6
912,123 - -0.2
912,125 - +0.4
912,126 - -0.6
912,145 - +1.1
912,149 - -0.2

Or see this region's nucleotide sequence