Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4067

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12434 and 12435 are separated by 131 nucleotides12435 and 12436 are separated by 539 nucleotides mRNA_4066: 12434 - K03426 E3.6.1.22, NUDT12, nudC NAD+ diphosphatase, at 1,273,272 to 1,275,258 12434 mRNA_4067: 12435 - KOG0324 Uncharacterized conserved protein, at 1,275,390 to 1,276,654 12435 mRNA_4068: 12436 - K02575 NRT, narK, nrtP, nasA MFS transporter, NNP family, nitrate/nitrite transporter, at 1,277,194 to 1,279,271 12436

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,274,770 + 12434 mRNA_4066 0.75 -1.2
1,274,920 - 12434 mRNA_4066 0.83 -0.6
1,275,048 - 12434 mRNA_4066 0.89 +0.1
1,275,187 + -0.3
1,275,203 - +0.5
1,275,212 - -1.8
1,275,213 + +1.2
1,275,361 + -0.5
1,275,364 + +0.7
1,275,372 + +1.5
1,275,889 - 12435 mRNA_4067 0.39 +1.3
1,275,927 - 12435 mRNA_4067 0.42 +0.3
1,275,928 - 12435 mRNA_4067 0.43 +0.2
1,275,959 + 12435 mRNA_4067 0.45 +2.2
1,276,107 + 12435 mRNA_4067 0.57 -1.0
1,276,890 - +0.6
1,277,419 - 12436 mRNA_4068 0.11 +0.4

Or see this region's nucleotide sequence