Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4079

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12446 and 12447 are separated by 231 nucleotides12447 and 12448 are separated by 61 nucleotides mRNA_4078: 12446 - K15113 SLC25A28_37, MFRN solute carrier family 25 (mitochondrial iron transporter), member 28/37, at 1,304,560 to 1,305,720 12446 mRNA_4079: 12447 - KOG2518 5'-3' exonuclease, at 1,305,952 to 1,309,026 12447 mRNA_4080: 12448 - Hypothetical Protein, at 1,309,088 to 1,309,498 12448

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,305,262 - 12446 mRNA_4078 0.60 -1.4
1,305,722 - -2.5
1,305,860 - -0.6
1,305,879 - -1.2
1,305,898 + +0.8
1,305,907 + -0.1
1,306,029 + +0.0
1,306,035 - +0.1
1,306,041 - -0.6
1,306,045 - +1.0
1,306,070 + +0.3
1,306,158 + +0.4
1,306,168 - +1.8
1,306,181 - +0.7
1,306,182 - +0.9
1,306,186 - +1.4
1,306,324 + 12447 mRNA_4079 0.12 +2.0
1,306,338 - 12447 mRNA_4079 0.13 +0.7
1,306,347 + 12447 mRNA_4079 0.13 +1.1
1,306,352 - 12447 mRNA_4079 0.13 +0.9
1,306,354 + 12447 mRNA_4079 0.13 +1.4
1,306,357 + 12447 mRNA_4079 0.13 +0.3
1,306,376 + 12447 mRNA_4079 0.14 +1.2
1,306,484 - 12447 mRNA_4079 0.17 +0.9
1,306,629 + 12447 mRNA_4079 0.22 +1.4
1,306,637 - 12447 mRNA_4079 0.22 +1.8
1,306,648 + 12447 mRNA_4079 0.23 +2.3
1,306,660 + 12447 mRNA_4079 0.23 +1.0
1,306,789 - 12447 mRNA_4079 0.27 +1.6
1,306,789 - 12447 mRNA_4079 0.27 +1.5
1,307,108 + 12447 mRNA_4079 0.38 +1.1
1,307,253 + 12447 mRNA_4079 0.42 +2.2
1,307,264 + 12447 mRNA_4079 0.43 +0.8
1,307,534 + 12447 mRNA_4079 0.51 +2.2
1,307,603 + 12447 mRNA_4079 0.54 +2.6
1,307,779 + 12447 mRNA_4079 0.59 +3.2
1,307,825 - 12447 mRNA_4079 0.61 +1.3
1,307,831 + 12447 mRNA_4079 0.61 +0.9
1,307,948 + 12447 mRNA_4079 0.65 +1.4
1,307,969 - 12447 mRNA_4079 0.66 -1.7
1,308,095 - 12447 mRNA_4079 0.70 +0.2
1,308,112 + 12447 mRNA_4079 0.70 +1.8
1,308,115 + 12447 mRNA_4079 0.70 +1.1
1,308,262 - 12447 mRNA_4079 0.75 +1.7
1,308,374 + 12447 mRNA_4079 0.79 +1.2
1,308,416 - 12447 mRNA_4079 0.80 +2.6
1,308,462 - 12447 mRNA_4079 0.82 -0.9
1,308,531 - 12447 mRNA_4079 0.84 +1.0
1,308,567 - 12447 mRNA_4079 0.85 +0.3
1,308,696 - 12447 mRNA_4079 0.89 +1.3
1,308,983 - +1.4
1,309,279 + 12448 mRNA_4080 0.46 -0.3
1,309,422 - 12448 mRNA_4080 0.81 +0.8
1,309,852 - +1.2
1,309,858 - -0.0
1,309,875 + -0.3

Or see this region's nucleotide sequence