Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4110

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12477 and 12478 are separated by 496 nucleotides12478 and 12479 are separated by 419 nucleotides mRNA_4109: 12477 - Hypothetical Protein, at 1,374,753 to 1,375,099 12477 mRNA_4110: 12478 - BLAST metal resistance protein ycf1 [Trichosporon asahii va..., at 1,375,596 to 1,376,142 12478 mRNA_4111: 12479 - K20296 ANG2, VPS51 vacuolar protein sorting-associated protein 51, at 1,376,562 to 1,377,671 12479

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,374,739 + +0.7
1,374,890 + 12477 mRNA_4109 0.39 -0.4
1,375,003 + 12477 mRNA_4109 0.72 -2.6
1,375,033 + 12477 mRNA_4109 0.81 -1.2
1,375,504 - -3.3
1,376,002 - 12478 mRNA_4110 0.74 +0.2
1,376,145 - -1.3
1,376,335 - -1.6
1,376,468 + +1.4
1,376,469 + -0.5
1,376,472 + -0.7
1,376,477 + +1.6
1,376,485 - -0.1
1,376,490 - +0.1
1,376,493 - +0.6
1,376,499 - -0.4
1,376,499 + +0.1
1,376,509 - +0.3
1,376,795 - 12479 mRNA_4111 0.21 +0.6
1,376,810 - 12479 mRNA_4111 0.22 +0.6
1,377,057 - 12479 mRNA_4111 0.45 +0.7

Or see this region's nucleotide sequence