Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4161

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12528 and 12529 are separated by 299 nucleotides12529 and 12530 are separated by 347 nucleotides mRNA_4160: 12528 - Hypothetical Protein, at 1,502,461 to 1,503,563 12528 mRNA_4161: 12529 - SUPERFAMILY--SSF52833, at 1,503,863 to 1,504,762 12529 mRNA_4162: 12530 - Hypothetical Protein, at 1,505,110 to 1,508,834 12530

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,503,315 - 12528 mRNA_4160 0.77 -0.4
1,503,477 - -0.0
1,503,482 + +0.1
1,503,493 + -1.9
1,503,608 + +0.6
1,503,610 + +0.4
1,503,626 + +1.3
1,503,778 - -0.9
1,503,933 - +1.3
1,504,138 + 12529 mRNA_4161 0.31 +0.2
1,504,215 - 12529 mRNA_4161 0.39 -1.1
1,504,224 + 12529 mRNA_4161 0.40 -1.4
1,504,275 + 12529 mRNA_4161 0.46 -0.6
1,504,380 + 12529 mRNA_4161 0.57 -0.7
1,504,407 - 12529 mRNA_4161 0.60 +0.6
1,504,514 - 12529 mRNA_4161 0.72 +1.2
1,504,551 - 12529 mRNA_4161 0.76 +0.6
1,504,881 + +2.2
1,505,272 - +0.0
1,505,584 - 12530 mRNA_4162 0.13 +0.1
1,505,636 - 12530 mRNA_4162 0.14 +1.7
1,505,734 - 12530 mRNA_4162 0.17 +0.0

Or see this region's nucleotide sequence