Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4185

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12552 and 12553 are separated by 845 nucleotides12553 and 12554 are separated by 558 nucleotides mRNA_4184: 12552 - K20989 DUR3 urea-proton symporter, at 1,558,379 to 1,561,248 12552 mRNA_4185: 12553 - KOG1212 Amidases, at 1,562,094 to 1,563,941 12553 mRNA_4186: 12554 - KOG2806 Chitinase, at 1,564,500 to 1,566,078 12554

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,561,234 - +0.7
1,561,534 - +1.4
1,561,606 + -4.6
1,561,872 + +0.5
1,562,022 + -0.1
1,562,165 - -0.6
1,562,167 - +0.5
1,562,478 + 12553 mRNA_4185 0.21 -0.2
1,562,630 + 12553 mRNA_4185 0.29 +0.8
1,562,787 + 12553 mRNA_4185 0.38 -0.0
1,562,789 - 12553 mRNA_4185 0.38 +2.3
1,562,965 + 12553 mRNA_4185 0.47 +1.0
1,563,079 + 12553 mRNA_4185 0.53 +0.5
1,563,117 + 12553 mRNA_4185 0.55 +0.4
1,563,254 - 12553 mRNA_4185 0.63 +0.0
1,563,556 + 12553 mRNA_4185 0.79 -0.6
1,563,597 + 12553 mRNA_4185 0.81 -0.4
1,563,597 + 12553 mRNA_4185 0.81 +0.7
1,564,360 + +0.8
1,564,386 - -1.4
1,564,544 - +0.0
1,564,547 + -1.0
1,564,549 - -0.7
1,564,675 - 12554 mRNA_4186 0.11 -1.6
1,564,689 - 12554 mRNA_4186 0.12 +1.4
1,564,817 + 12554 mRNA_4186 0.20 -0.1
1,564,834 + 12554 mRNA_4186 0.21 -1.0

Or see this region's nucleotide sequence