Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4207

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12573 and 12574 are separated by 75 nucleotides12574 and 12575 overlap by 29 nucleotides12575 and 12576 are separated by 404 nucleotides mRNA_4205: 12573 - K09276 YBX1, NSEP1 Y-box-binding protein 1, at 1,609,295 to 1,611,072 12573 mRNA_4206: 12574 - Hypothetical Protein, at 1,611,148 to 1,611,771 12574 mRNA_4207: 12575 - BLAST similar to An07g08470 [Aspergillus kawachii IFO 4308], at 1,611,743 to 1,613,207 12575 mRNA_4208: 12576 - K17919 SNX4 sorting nexin-4, at 1,613,612 to 1,615,514 12576

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,610,744 - 12573 mRNA_4205 0.81 +0.7
1,610,875 - 12573 mRNA_4205 0.89 -0.0
1,610,879 + 12573 mRNA_4205 0.89 +0.1
1,610,899 - +0.0
1,610,910 + -0.2
1,610,925 - +0.8
1,611,086 - +0.5
1,611,197 - +0.4
1,611,220 - 12574 mRNA_4206 0.12 +0.2
1,611,236 + 12574 mRNA_4206 0.14 -0.9
1,611,336 + 12574 mRNA_4206 0.30 +0.1
1,611,374 - 12574 mRNA_4206 0.36 +2.0
1,611,378 + 12574 mRNA_4206 0.37 +0.1
1,611,510 - 12574 mRNA_4206 0.58 -0.3
1,611,518 + 12574 mRNA_4206 0.59 +0.8
1,611,519 - 12574 mRNA_4206 0.59 +0.2
1,611,524 + 12574 mRNA_4206 0.60 +0.6
1,611,526 - 12574 mRNA_4206 0.61 -0.3
1,611,542 - 12574 mRNA_4206 0.63 -0.6
1,611,641 + 12574 mRNA_4206 0.79 -1.0
1,611,647 + 12574 mRNA_4206 0.80 +0.1
1,612,125 - 12575 mRNA_4207 0.26 -0.1
1,612,129 + 12575 mRNA_4207 0.26 +2.2
1,612,536 + 12575 mRNA_4207 0.54 -1.8
1,612,675 + 12575 mRNA_4207 0.64 -0.1
1,612,686 - 12575 mRNA_4207 0.64 +0.1
1,612,855 - 12575 mRNA_4207 0.76 +0.8
1,612,978 - 12575 mRNA_4207 0.84 +0.8
1,612,991 - 12575 mRNA_4207 0.85 +1.5
1,613,128 + +0.1
1,613,168 + +0.5
1,613,276 - -0.2
1,613,286 - -1.6
1,613,295 + -1.6
1,613,312 + -1.3
1,613,457 + +0.8
1,613,566 + +0.9
1,613,570 - -0.2
1,613,615 + -0.5
1,613,722 + -0.3

Or see this region's nucleotide sequence