Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4259

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12626 and 12627 are separated by 626 nucleotides12627 and 12628 are separated by 629 nucleotides mRNA_4258: 12626 - KOG4044 Mitochondrial associated endoribonuclease MAR1 (isochorismatase superfamily), at 1,727,283 to 1,728,545 12626 mRNA_4259: 12627 - SUPERFAMILY--SSF51445, at 1,729,172 to 1,731,284 12627 mRNA_4260: 12628 - K11849 USP25_28, UBP2 ubiquitin carboxyl-terminal hydrolase 25/28, at 1,731,914 to 1,736,985 12628

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,728,184 - 12626 mRNA_4258 0.71 -0.2
1,728,201 + 12626 mRNA_4258 0.73 -0.7
1,731,340 + +0.4
1,731,346 + +1.1
1,731,347 + -0.7
1,731,348 + +1.3
1,731,361 - -0.4
1,731,508 - +1.5
1,731,522 - -0.0
1,731,535 + +0.1
1,731,662 + -0.1
1,731,664 - -0.5
1,731,671 - -0.2
1,731,677 - -1.3
1,731,680 + +0.2
1,731,681 + -1.2
1,731,682 + -0.2
1,731,682 - -0.3
1,731,684 - +0.4
1,731,684 + +0.4
1,731,685 + +0.3
1,731,686 + +0.0
1,731,692 - +0.2
1,731,696 + +1.5
1,731,697 + -0.1
1,731,699 + +0.3
1,731,701 - -1.0
1,731,732 - +0.7
1,731,732 + +0.1
1,731,811 - +1.8
1,731,829 + +0.2
1,731,879 - -0.9
1,731,894 - +0.6
1,732,141 - -0.4

Or see this region's nucleotide sequence