Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4275

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12642 and 12643 are separated by 242 nucleotides12643 and 12644 are separated by 365 nucleotides mRNA_4274: 12642 - K01720 prpD 2-methylcitrate dehydratase, at 1,771,477 to 1,773,946 12642 mRNA_4275: 12643 - HMMPfam-RhoGEF domain-PF00621,ProSiteProfiles-Dbl homology (DH) domain profile.-PS50010,SUPERFAMILY--SSF48065, at 1,774,189 to 1,777,372 12643 mRNA_4276: 12644 - Hypothetical Protein, at 1,777,738 to 1,779,130 12644

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,773,449 + 12642 mRNA_4274 0.80 -1.6
1,773,451 - 12642 mRNA_4274 0.80 -1.4
1,773,452 + 12642 mRNA_4274 0.80 +0.1
1,773,597 - 12642 mRNA_4274 0.86 -1.2
1,773,600 + 12642 mRNA_4274 0.86 -0.5
1,773,604 + 12642 mRNA_4274 0.86 -2.4
1,773,616 - 12642 mRNA_4274 0.87 -0.0
1,773,619 + 12642 mRNA_4274 0.87 +0.7
1,773,640 + 12642 mRNA_4274 0.88 -0.2
1,773,642 + 12642 mRNA_4274 0.88 -0.5
1,773,661 + 12642 mRNA_4274 0.88 -0.1
1,773,936 + -0.1
1,774,597 - 12643 mRNA_4275 0.13 +1.4
1,774,682 - 12643 mRNA_4275 0.15 +2.2
1,775,075 + 12643 mRNA_4275 0.28 +0.6
1,775,215 + 12643 mRNA_4275 0.32 +0.1
1,775,397 - 12643 mRNA_4275 0.38 +0.4
1,775,414 + 12643 mRNA_4275 0.38 -0.9
1,775,689 + 12643 mRNA_4275 0.47 +0.9
1,775,695 + 12643 mRNA_4275 0.47 -0.3
1,775,779 - 12643 mRNA_4275 0.50 -0.8
1,775,952 + 12643 mRNA_4275 0.55 +1.0
1,776,127 - 12643 mRNA_4275 0.61 +1.5
1,776,162 - 12643 mRNA_4275 0.62 +1.4
1,776,219 - 12643 mRNA_4275 0.64 -0.2
1,776,240 - 12643 mRNA_4275 0.64 -1.7
1,776,432 - 12643 mRNA_4275 0.70 -0.1
1,776,535 - 12643 mRNA_4275 0.74 -2.2
1,776,721 + 12643 mRNA_4275 0.80 -0.3
1,776,740 - 12643 mRNA_4275 0.80 -0.2
1,776,886 - 12643 mRNA_4275 0.85 +0.2
1,776,897 + 12643 mRNA_4275 0.85 +2.0
1,776,978 - 12643 mRNA_4275 0.88 +2.7
1,776,981 + 12643 mRNA_4275 0.88 -0.8
1,777,133 + -0.5
1,777,270 - +0.1
1,777,290 + -0.2
1,777,293 - +1.2
1,777,298 + +0.3
1,777,393 + -2.5
1,777,427 + +1.3
1,777,454 + -0.8
1,777,463 + -0.2
1,777,871 - +1.6
1,777,892 + 12644 mRNA_4276 0.11 +1.6
1,777,895 - 12644 mRNA_4276 0.11 -1.6
1,777,898 + 12644 mRNA_4276 0.11 -0.7
1,778,171 + 12644 mRNA_4276 0.31 -0.7
1,778,335 + 12644 mRNA_4276 0.43 -0.5
1,778,370 - 12644 mRNA_4276 0.45 -0.3

Or see this region's nucleotide sequence