Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4281

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12648 and 12649 are separated by 461 nucleotides12649 and 12650 are separated by 939 nucleotides mRNA_4280: 12648 - HMMPfam-Actin interacting protein 3-PF03915,SMART-Actin interacting protein 3-SM00806, at 1,790,909 to 1,794,329 12648 mRNA_4281: 12649 - K11778 DHDDS, RER2, SRT1 ditrans,polycis-polyprenyl diphosphate synthase, at 1,794,791 to 1,795,923 12649 mRNA_4282: 12650 - Hypothetical Protein, at 1,796,863 to 1,797,558 12650

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,793,855 - 12648 mRNA_4280 0.86 +0.1
1,793,948 - 12648 mRNA_4280 0.89 +1.1
1,794,025 + +1.2
1,794,136 + +0.7
1,794,271 - +0.8
1,794,273 + +1.4
1,794,279 - +0.6
1,794,280 - +1.2
1,794,286 - +0.8
1,794,548 - +3.1
1,795,993 + -1.0
1,796,155 - +0.7
1,796,171 + +0.3
1,796,191 - -0.3
1,796,210 - -0.5
1,796,781 - -0.4
1,796,879 + -0.2

Or see this region's nucleotide sequence