Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4287

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12654 and 12655 are separated by 184 nucleotides12655 and 12656 are separated by 129 nucleotides mRNA_4286: 12654 - K01288 KEX1 carboxypeptidase D, at 1,805,438 to 1,808,326 12654 mRNA_4287: 12655 - K14559 MPP10 U3 small nucleolar RNA-associated protein MPP10, at 1,808,511 to 1,811,471 12655 mRNA_4288: 12656 - Hypothetical Protein, at 1,811,601 to 1,812,350 12656

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,807,711 - 12654 mRNA_4286 0.79 -0.4
1,808,050 + -1.0
1,808,274 - +0.1
1,808,274 + +0.7
1,808,282 - -1.7
1,808,289 - -1.0
1,808,299 + -1.5
1,808,303 - +0.6
1,808,318 + +0.2
1,808,326 - +1.0
1,808,436 - +1.1
1,808,436 + +0.4
1,808,438 - +0.2
1,808,445 + +0.9
1,808,447 - +0.7
1,808,455 - -0.3
1,808,457 + +1.6
1,808,602 - +0.3
1,811,537 + -1.0
1,811,541 - +1.1
1,811,608 - -0.6
1,811,679 + 12656 mRNA_4288 0.10 +0.6
1,811,975 - 12656 mRNA_4288 0.50 -0.5
1,812,022 + 12656 mRNA_4288 0.56 -0.8
1,812,096 + 12656 mRNA_4288 0.66 +0.3
1,812,267 - 12656 mRNA_4288 0.89 -1.1
1,812,425 + +0.9

Or see this region's nucleotide sequence