Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4318

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12685 and 12686 are separated by 109 nucleotides12686 and 12687 are separated by 706 nucleotides mRNA_4317: 12685 - K07025 K07025 putative hydrolase of the HAD superfamily, at 1,891,657 to 1,892,743 12685 mRNA_4318: 12686 - HMMPfam-SnoaL-like domain-PF13577,SUPERFAMILY--SSF54427, at 1,892,853 to 1,893,990 12686 mRNA_4319: 12687 - Hypothetical Protein, at 1,894,697 to 1,895,182 12687

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,892,153 + 12685 mRNA_4317 0.46 -1.2
1,892,287 - 12685 mRNA_4317 0.58 -1.5
1,892,425 - 12685 mRNA_4317 0.71 +0.2
1,893,029 - 12686 mRNA_4318 0.15 -1.3
1,893,031 + 12686 mRNA_4318 0.16 -0.3
1,893,177 - 12686 mRNA_4318 0.28 +0.3
1,893,183 + 12686 mRNA_4318 0.29 +0.2
1,893,439 - 12686 mRNA_4318 0.51 -0.3
1,893,616 + 12686 mRNA_4318 0.67 +0.1
1,893,769 + 12686 mRNA_4318 0.80 +0.2
1,894,037 - -1.3
1,894,309 - -1.8
1,894,463 - +1.4
1,894,489 - +0.2
1,894,554 - -0.4
1,894,560 - +1.4
1,894,562 - -0.8
1,894,563 + +0.3
1,894,572 + +0.1
1,894,676 + -0.1
1,894,728 - +0.7
1,894,737 + -0.3
1,894,970 + 12687 mRNA_4319 0.56 +1.4

Or see this region's nucleotide sequence