Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4321

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12688 and 12689 are separated by 291 nucleotides mRNA_4320: 12688 - K03255 TIF31, CLU1 protein TIF31, at 1,895,347 to 1,900,311 12688 mRNA_4321: 12689 - K14960 CXXC1, SPP1, CPS40 COMPASS component SPP1, at 1,900,603 to 1,903,265 12689

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,899,653 - 12688 mRNA_4320 0.87 -0.8
1,899,667 + 12688 mRNA_4320 0.87 -0.3
1,899,675 + 12688 mRNA_4320 0.87 -1.2
1,899,773 - 12688 mRNA_4320 0.89 -2.6
1,899,784 - 12688 mRNA_4320 0.89 -1.6
1,899,821 + -0.1
1,899,959 + -1.1
1,900,262 + +0.9
1,900,394 + +0.1
1,900,397 + +0.3
1,900,412 + +0.4
1,900,420 - -0.4
1,900,427 + +0.8
1,900,437 + -0.4
1,901,274 + 12689 mRNA_4321 0.25 +1.4
1,902,043 + 12689 mRNA_4321 0.54 +2.3
1,902,236 - 12689 mRNA_4321 0.61 +0.7
1,902,290 - 12689 mRNA_4321 0.63 +0.1
1,902,849 + 12689 mRNA_4321 0.84 +1.1
1,902,891 + 12689 mRNA_4321 0.86 +1.3
1,902,895 + 12689 mRNA_4321 0.86 +1.2
1,903,009 - +0.4
1,903,024 - +0.9
1,903,026 - -0.5
1,903,032 + +0.4
1,903,161 - +0.0
1,903,200 - +0.1
1,903,201 - +0.3
1,903,309 + +1.3
1,903,460 + +0.6
1,903,463 + +1.3
1,903,465 - +0.7
1,903,468 - +1.7
1,903,471 - +1.0
1,903,486 + +0.2
1,903,630 + +0.3
1,903,642 - -0.1
1,903,772 - +0.1
1,903,773 + +0.3
1,903,773 + -1.3
1,903,784 - +0.1
1,903,788 - -0.6
1,903,792 - +0.1
1,903,793 + -1.2
1,903,794 + -0.6
1,903,804 - -0.1
1,903,864 - -0.0
1,903,864 - +0.8
1,903,868 + +0.9
1,903,890 - -0.2
1,903,999 + +0.0
1,904,020 - +1.0
1,904,160 - +0.3
1,904,166 - +0.9
1,904,168 + +0.6
1,904,172 + +1.0
1,904,175 - +0.8
1,904,179 + +0.9
1,904,183 - -0.8

Or see this region's nucleotide sequence