Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4359

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12727 and 12728 are separated by 227 nucleotides mRNA_4359: 12727 - Hypothetical Protein, at 194 to 736 12727 mRNA_4360: 12728 - Hypothetical Protein, at 964 to 3,087 12728

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1 + -0.5
34 + -0.2
36 + -0.5
40 + +2.2
106 - -1.7
115 + +1.3
156 - +0.4
162 + +2.0
170 + -0.3
318 + 12727 mRNA_4359 0.23 -1.3
397 + 12727 mRNA_4359 0.37 +1.9
440 + 12727 mRNA_4359 0.45 +1.2
450 + 12727 mRNA_4359 0.47 +0.9
491 + 12727 mRNA_4359 0.55 -1.5
494 - 12727 mRNA_4359 0.55 -0.5
500 - 12727 mRNA_4359 0.56 +0.2
513 + 12727 mRNA_4359 0.59 +1.4
527 - 12727 mRNA_4359 0.61 +0.1
535 + 12727 mRNA_4359 0.63 +1.3
537 - 12727 mRNA_4359 0.63 +0.2
573 - 12727 mRNA_4359 0.70 -0.7
575 - 12727 mRNA_4359 0.70 +1.4
575 - 12727 mRNA_4359 0.70 +0.2
585 + 12727 mRNA_4359 0.72 -0.2
627 - 12727 mRNA_4359 0.80 +0.8
629 + 12727 mRNA_4359 0.80 +0.7
632 + 12727 mRNA_4359 0.81 +0.7
655 + 12727 mRNA_4359 0.85 -1.0
657 - 12727 mRNA_4359 0.85 +0.2
666 + 12727 mRNA_4359 0.87 -0.2
837 + +0.6
866 + -0.3
966 + +0.6
1,080 + +0.0
1,091 + +1.1
1,091 + +0.3
1,092 + +0.8
1,119 + +0.7
1,180 - 12728 mRNA_4360 0.10 +1.4
1,185 - 12728 mRNA_4360 0.10 -1.0
1,186 + 12728 mRNA_4360 0.10 -1.7
1,262 + 12728 mRNA_4360 0.14 -0.1
1,362 + 12728 mRNA_4360 0.19 +0.4
1,365 - 12728 mRNA_4360 0.19 +0.0
1,368 - 12728 mRNA_4360 0.19 +1.5
1,381 + 12728 mRNA_4360 0.20 -0.4
1,539 - 12728 mRNA_4360 0.27 +1.3
1,589 + 12728 mRNA_4360 0.29 -0.8
1,630 + 12728 mRNA_4360 0.31 +0.6
1,688 + 12728 mRNA_4360 0.34 -0.1
1,692 + 12728 mRNA_4360 0.34 +1.6
1,698 - 12728 mRNA_4360 0.35 +0.7
1,699 + 12728 mRNA_4360 0.35 +0.3

Or see this region's nucleotide sequence