Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4410

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12777 and 12778 are separated by 310 nucleotides12778 and 12779 are separated by 384 nucleotides mRNA_4409: 12777 - KOG1218 Proteins containing Ca2+-binding EGF-like domains, at 113,128 to 114,818 12777 mRNA_4410: 12778 - K00877 THI20 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase / thiaminase, at 115,129 to 117,248 12778 mRNA_4411: 12779 - K14790 NOP9 nucleolar protein 9, at 117,633 to 120,365 12779

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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114,379 - 12777 mRNA_4409 0.74 -0.6
114,510 + 12777 mRNA_4409 0.82 -0.0
114,691 + -0.6
114,708 - -0.1
114,871 + -0.9
114,873 + +1.3
115,005 + -0.2
115,556 + 12778 mRNA_4410 0.20 +0.4
115,565 + 12778 mRNA_4410 0.21 -0.2
115,830 - 12778 mRNA_4410 0.33 +0.8
115,834 + 12778 mRNA_4410 0.33 -1.0
115,863 - 12778 mRNA_4410 0.35 -1.3
115,943 - 12778 mRNA_4410 0.38 +0.6
115,950 + 12778 mRNA_4410 0.39 -0.7
116,444 - 12778 mRNA_4410 0.62 +2.5
116,531 - 12778 mRNA_4410 0.66 -0.3
116,801 - 12778 mRNA_4410 0.79 +2.3
116,861 - 12778 mRNA_4410 0.82 +0.4
116,895 + 12778 mRNA_4410 0.83 +0.7
117,134 + +0.4
117,145 + +2.1
117,165 + -0.5
117,475 + +1.1
117,484 - +0.9
117,603 - +0.6

Or see this region's nucleotide sequence