Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4411

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12778 and 12779 are separated by 384 nucleotides12779 and 12780 are separated by 76 nucleotides mRNA_4410: 12778 - K00877 THI20 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase / thiaminase, at 115,129 to 117,248 12778 mRNA_4411: 12779 - K14790 NOP9 nucleolar protein 9, at 117,633 to 120,365 12779 mRNA_4412: 12780 - SUPERFAMILY--SSF52047, at 120,442 to 126,387 12780

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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116,801 - 12778 mRNA_4410 0.79 +2.3
116,861 - 12778 mRNA_4410 0.82 +0.4
116,895 + 12778 mRNA_4410 0.83 +0.7
117,134 + +0.4
117,145 + +2.1
117,165 + -0.5
117,475 + +1.1
117,484 - +0.9
117,603 - +0.6
120,247 + +0.1
120,320 + -0.8
120,472 + +0.7
120,509 - +0.7
120,811 + -0.1
120,955 - +1.0
120,956 - +1.6
121,062 - 12780 mRNA_4412 0.10 -0.3

Or see this region's nucleotide sequence