Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4440

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12806 and 12807 are separated by 193 nucleotides12807 and 12808 are separated by 283 nucleotides12808 and 12809 are separated by 488 nucleotides mRNA_4438: 12806 - Hypothetical Protein, at 182,518 to 183,149 12806 mRNA_4439: 12807 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 183,343 to 183,707 12807 mRNA_4440: 12808 - KOG2439 Nuclear architecture related protein, at 183,991 to 186,593 12808 mRNA_4441: 12809 - SUPERFAMILY--SSF52047, at 187,082 to 188,392 12809

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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183,039 + 12806 mRNA_4438 0.82 +0.6
183,067 - 12806 mRNA_4438 0.87 +0.3
183,147 - +0.4
183,188 + -0.6
183,230 + -0.6
183,232 - +0.8
183,331 - +0.8
183,384 + 12807 mRNA_4439 0.11 -1.6
183,435 - 12807 mRNA_4439 0.25 +1.4
183,435 - 12807 mRNA_4439 0.25 -0.4
183,488 + 12807 mRNA_4439 0.40 -2.1
183,737 + +0.2
183,768 - +0.4
183,802 - -0.1
183,943 + +1.8
183,953 + -0.6
185,088 + 12808 mRNA_4440 0.42 -0.5
186,705 - +0.4
186,776 - -1.2
186,894 + +1.6
187,167 + -0.1
187,173 + +2.3
187,326 - 12809 mRNA_4441 0.19 -1.2
187,335 + 12809 mRNA_4441 0.19 +0.9

Or see this region's nucleotide sequence