Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4461

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12828 and 12829 are separated by 368 nucleotides mRNA_4460: 12828 - SUPERFAMILY--SSF52047, at 237,623 to 238,720 12828 mRNA_4461: 12829 - SUPERFAMILY--SSF52047, at 239,089 to 240,569 12829

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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238,316 + 12828 mRNA_4460 0.63 +1.1
238,562 - 12828 mRNA_4460 0.86 -0.5
238,635 - +1.2
238,984 - -0.3
239,005 + +0.4
239,151 + +0.6
239,170 + +0.5
239,436 - 12829 mRNA_4461 0.23 +0.5
239,654 - 12829 mRNA_4461 0.38 +2.0
239,807 - 12829 mRNA_4461 0.48 +0.5
239,855 + 12829 mRNA_4461 0.52 -0.4
239,891 + 12829 mRNA_4461 0.54 -0.7
240,124 - 12829 mRNA_4461 0.70 +0.0
240,127 + 12829 mRNA_4461 0.70 +0.3
240,149 - 12829 mRNA_4461 0.72 -0.6
240,265 + 12829 mRNA_4461 0.79 -0.9
240,280 - 12829 mRNA_4461 0.80 +0.6
240,308 + 12829 mRNA_4461 0.82 -1.3
240,431 - +0.2
240,447 + -0.5
240,464 - -0.4
240,475 + +0.2
240,873 - +0.5
240,874 - -0.1
240,877 - +2.0
241,210 + -1.4
241,363 + +1.7
241,433 - -0.2
241,475 - -0.1

Or see this region's nucleotide sequence