Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4476

Experiment: YNB Methylricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12843 and 12844 are separated by 263 nucleotides12844 and 12845 are separated by 570 nucleotides mRNA_4475: 12843 - K05917 CYP51 sterol 14-demethylase, at 271,874 to 274,192 12843 mRNA_4476: 12844 - HMMPfam-Domain of unknown function (DUF543)-PF04418, at 274,456 to 275,559 12844 mRNA_4477: 12845 - HMMPfam-CFEM domain-PF05730,SMART--SM00747, at 276,130 to 277,462 12845

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
remove
274,240 - +0.7
274,354 - -0.8
274,516 - -0.3
274,545 + -2.0
274,555 - -1.6
274,560 - +0.7
274,568 + 12844 mRNA_4476 0.10 -0.8
274,651 + 12844 mRNA_4476 0.18 -3.1
274,835 + 12844 mRNA_4476 0.34 -1.3
274,985 + 12844 mRNA_4476 0.48 -1.2
274,998 + 12844 mRNA_4476 0.49 -0.4
275,126 + 12844 mRNA_4476 0.61 +0.1
275,150 + 12844 mRNA_4476 0.63 -1.2
275,430 + 12844 mRNA_4476 0.88 -1.8
275,440 - 12844 mRNA_4476 0.89 -0.5
275,544 - -1.2
275,593 + +0.6
275,601 + -2.2
275,601 - +1.7
275,920 - -0.7

Or see this region's nucleotide sequence