Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4492

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12859 and 12860 are separated by 672 nucleotides12860 and 12861 are separated by 191 nucleotides mRNA_4491: 12859 - Hypothetical Protein, at 306,091 to 307,232 12859 mRNA_4492: 12860 - KOG1198 Zinc-binding oxidoreductase, at 307,905 to 309,384 12860 mRNA_4493: 12861 - SUPERFAMILY--SSF52047, at 309,576 to 311,024 12861

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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307,546 - +1.3
307,687 - -0.4
307,907 + +0.3
307,918 + -1.5
307,919 + +0.7
308,052 + +0.0
308,199 - 12860 mRNA_4492 0.20 +2.3
308,205 + 12860 mRNA_4492 0.20 -1.2
308,597 + 12860 mRNA_4492 0.47 +1.0
308,736 + 12860 mRNA_4492 0.56 +0.4
308,803 - 12860 mRNA_4492 0.61 -0.2
308,898 - 12860 mRNA_4492 0.67 +0.4
308,940 + 12860 mRNA_4492 0.70 -1.8
309,032 + 12860 mRNA_4492 0.76 +0.3
309,087 + 12860 mRNA_4492 0.80 -0.6
309,227 + 12860 mRNA_4492 0.89 +0.8
309,337 + -0.3
309,499 - +1.9
309,513 - +0.1
309,636 - -0.0
309,693 + -1.0
309,766 + 12861 mRNA_4493 0.13 +0.6
310,345 - 12861 mRNA_4493 0.53 +1.1

Or see this region's nucleotide sequence