Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4496

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12863 and 12864 are separated by 284 nucleotides mRNA_4495: 12863 - HMMPfam-TRAPP trafficking subunit Trs65-PF12735, at 313,110 to 316,762 12863 mRNA_4496: 12864 - SUPERFAMILY--SSF81383, at 317,047 to 318,791 12864

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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316,556 - +1.6
316,619 + -0.3
316,653 + +0.0
316,700 - -0.5
316,846 - +0.4
316,850 + +0.2
316,967 + +1.5
317,297 - 12864 mRNA_4496 0.14 -1.7
317,326 - 12864 mRNA_4496 0.16 +1.9
317,337 - 12864 mRNA_4496 0.17 +0.8
317,422 - 12864 mRNA_4496 0.21 +0.2
317,706 - 12864 mRNA_4496 0.38 +0.0
317,763 + 12864 mRNA_4496 0.41 -0.5
317,780 - 12864 mRNA_4496 0.42 -0.2
318,170 + 12864 mRNA_4496 0.64 +0.9
318,733 + +0.9
319,032 + +1.1
319,162 + +1.0
319,207 - +0.3
319,323 + +0.3
319,535 + -0.2
319,751 + +1.8
319,773 + -0.7
319,775 - +2.8

Or see this region's nucleotide sequence