Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4503

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12870 and 12871 are separated by 306 nucleotides12871 and 12872 are separated by 546 nucleotides mRNA_4502: 12870 - KOG3720 Lysosomal & prostatic acid phosphatases, at 332,888 to 334,792 12870 mRNA_4503: 12871 - K12397 AP3B AP-3 complex subunit beta, at 335,099 to 337,846 12871 mRNA_4504: 12872 - Hypothetical Protein, at 338,393 to 338,917 12872

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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334,198 + 12870 mRNA_4502 0.69 +0.9
334,410 - 12870 mRNA_4502 0.80 -0.8
334,417 + 12870 mRNA_4502 0.80 +2.3
334,417 + 12870 mRNA_4502 0.80 +0.9
334,420 - 12870 mRNA_4502 0.80 -1.9
334,423 - 12870 mRNA_4502 0.81 -0.7
334,424 + 12870 mRNA_4502 0.81 -0.2
334,441 + 12870 mRNA_4502 0.82 +1.4
334,541 - 12870 mRNA_4502 0.87 +0.6
334,545 - 12870 mRNA_4502 0.87 +1.6
334,730 - -1.9
334,839 - -1.8
334,980 + +2.3
335,003 + -0.5
335,004 - +0.0
335,016 + +0.3
335,027 + +0.6
335,036 + -0.7
335,038 - -0.4
335,306 - +1.5
335,328 + -0.4
335,635 + 12871 mRNA_4503 0.20 +0.0
336,585 + 12871 mRNA_4503 0.54 -0.1
336,943 + 12871 mRNA_4503 0.67 -0.3
338,090 - -0.1
338,237 - -0.5
338,243 - -1.2
338,248 + +0.0
338,279 + +0.0
338,400 - +1.2
338,402 - -0.3
338,412 + -0.6
338,422 + +1.0
338,682 + 12872 mRNA_4504 0.55 +0.4
338,699 + 12872 mRNA_4504 0.58 +0.2
338,699 + 12872 mRNA_4504 0.58 -0.2

Or see this region's nucleotide sequence