Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4529

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12896 and 12897 are separated by 801 nucleotides mRNA_4528: 12896 - Hypothetical Protein, at 386,739 to 388,320 12896 mRNA_4529: 12897 - HMMPfam-Galactose oxidase, central domain-PF13418,SUPERFAMILY--SSF117281, at 389,122 to 390,984 12897

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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388,235 - -0.5
388,420 + -0.1
388,449 + -0.3
388,556 - +0.6
388,561 + +0.1
388,571 + +0.4
388,571 + +0.6
388,574 - +0.0
388,590 - +0.5
388,593 - +0.2
388,732 + -0.2
389,149 + -0.3
389,179 - -1.6
389,181 + -3.0
389,625 - 12897 mRNA_4529 0.27 +0.6
389,930 + 12897 mRNA_4529 0.43 -1.5
389,936 + 12897 mRNA_4529 0.44 -0.1
390,179 - 12897 mRNA_4529 0.57 -0.9
390,349 - 12897 mRNA_4529 0.66 -0.4
391,917 + -0.7

Or see this region's nucleotide sequence