Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4557

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12924 and 12925 are separated by 62 nucleotides12925 and 12926 are separated by 233 nucleotides mRNA_4556: 12924 - KOG1294 Apurinic/apyrimidinic endonuclease and related enzymes, at 455,167 to 456,572 12924 mRNA_4557: 12925 - KOG3318 Predicted membrane protein, at 456,635 to 457,680 12925 mRNA_4558: 12926 - K03320 amt, AMT, MEP ammonium transporter, Amt family, at 457,914 to 459,915 12926

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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455,786 + 12924 mRNA_4556 0.44 +2.3
455,964 - 12924 mRNA_4556 0.57 -1.7
456,452 + -0.5
456,748 - 12925 mRNA_4557 0.11 -0.1
456,763 + 12925 mRNA_4557 0.12 -0.6
456,799 - 12925 mRNA_4557 0.16 +0.4
456,915 + 12925 mRNA_4557 0.27 +0.7
456,918 + 12925 mRNA_4557 0.27 +2.2
457,349 + 12925 mRNA_4557 0.68 +2.3
457,364 - 12925 mRNA_4557 0.70 +0.2
457,931 - +1.3
458,010 + +1.0
458,032 - +1.1
458,043 - +0.0
458,195 - 12926 mRNA_4558 0.14 -1.0
458,337 - 12926 mRNA_4558 0.21 -1.0

Or see this region's nucleotide sequence