Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4559

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12926 and 12927 are separated by 974 nucleotides12927 and 12928 are separated by 558 nucleotides mRNA_4558: 12926 - K03320 amt, AMT, MEP ammonium transporter, Amt family, at 457,914 to 459,915 12926 mRNA_4559: 12927 - HMMPfam-PAP2 superfamily-PF01569,SMART-Acid phosphatase homologues-SM00014,SUPERFAMILY--SSF48317, at 460,890 to 462,526 12927 mRNA_4560: 12928 - Hypothetical Protein, at 463,085 to 464,279 12928

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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459,958 - +0.1
460,125 - +1.1
460,130 - -0.9
460,131 - -0.2
460,135 - -0.1
460,140 - +0.1
460,144 + +0.9
460,169 - -0.2
460,171 + -1.6
460,240 - +0.4
460,243 + -0.0
460,246 - +0.7
460,253 - +0.1
460,254 - -0.8
460,255 - +0.2
460,258 + -0.7
460,264 + +0.6
460,265 - +0.7
460,402 + -0.1
460,421 + -1.5
460,549 - -0.2
460,850 - +0.0
460,870 - +0.7
462,587 - -0.9
462,599 - -0.5
462,761 + +0.2
462,764 + +0.2
462,872 + +0.3
462,882 + -0.2
462,894 + +0.1
463,188 + +1.4

Or see this region's nucleotide sequence