Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4580

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12948 and 12949 are separated by 265 nucleotides mRNA_4580: 12948 - Hypothetical Protein, at 512,384 to 513,483 12948 mRNA_4581: 12949 - K17964 LRPPRC leucine-rich PPR motif-containing protein, mitochondrial, at 513,749 to 516,613 12949

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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511,394 - +0.5
511,413 - +0.9
511,424 + +1.3
511,425 + +1.0
511,537 - -1.1
511,538 - -0.4
511,586 - +0.3
511,690 - +0.7
511,842 - -0.2
511,852 - -1.2
512,140 - -0.2
512,140 + +0.1
512,145 - +0.0
512,155 + -0.4
512,271 - -0.3
512,290 - +0.2
512,290 - +0.9
512,297 - -0.3
512,302 - +0.9
512,318 - +0.3
512,443 - +0.1
512,483 - -1.6
512,743 + 12948 mRNA_4580 0.33 -0.3
513,329 - 12948 mRNA_4580 0.86 +0.1
513,348 + 12948 mRNA_4580 0.88 -0.9
513,465 + +1.5

Or see this region's nucleotide sequence