Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4581

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12948 and 12949 are separated by 265 nucleotides12949 and 12950 are separated by 497 nucleotides mRNA_4580: 12948 - Hypothetical Protein, at 512,384 to 513,483 12948 mRNA_4581: 12949 - K17964 LRPPRC leucine-rich PPR motif-containing protein, mitochondrial, at 513,749 to 516,613 12949 mRNA_4582: 12950 - KOG2450 Aldehyde dehydrogenase, at 517,111 to 519,102 12950

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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513,329 - 12948 mRNA_4580 0.86 +0.1
513,348 + 12948 mRNA_4580 0.88 -0.9
513,465 + +1.5
516,669 + -0.1
516,744 + +0.1
516,760 + -0.3
516,879 + -0.9
516,896 + +0.1
516,897 + -0.1
516,902 + -1.5
516,984 - +0.1
516,988 - +1.0
516,990 + +0.7
517,023 + -0.3
517,029 + +0.3
517,045 - +0.3
517,061 + +0.1
517,067 + -0.6
517,210 + -0.4
517,328 - 12950 mRNA_4582 0.11 +1.2
517,339 - 12950 mRNA_4582 0.11 -0.4
517,364 - 12950 mRNA_4582 0.13 -1.1
517,479 - 12950 mRNA_4582 0.18 +0.4
517,485 - 12950 mRNA_4582 0.19 +0.8

Or see this region's nucleotide sequence