Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4611

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 12978 and 12979 are separated by 325 nucleotides mRNA_4610: 12978 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701, at 578,505 to 580,784 12978 mRNA_4611: 12979 - K07652 vicK two-component system, OmpR family, sensor histidine kinase VicK, at 581,110 to 587,880 12979

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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580,383 + 12978 mRNA_4610 0.82 +1.6
580,939 + +0.1
581,229 - -1.3
581,556 + +0.7
581,813 - 12979 mRNA_4611 0.10 +0.9
582,440 + 12979 mRNA_4611 0.20 -0.2
582,440 + 12979 mRNA_4611 0.20 -0.3
583,201 - 12979 mRNA_4611 0.31 -1.6
583,212 - 12979 mRNA_4611 0.31 -0.4
583,743 + 12979 mRNA_4611 0.39 -0.7
583,903 - 12979 mRNA_4611 0.41 +0.1
583,937 + 12979 mRNA_4611 0.42 -1.8
584,034 - 12979 mRNA_4611 0.43 +1.1
584,982 + 12979 mRNA_4611 0.57 +0.6
585,009 + 12979 mRNA_4611 0.58 +0.3
585,175 + 12979 mRNA_4611 0.60 -1.0
585,542 - 12979 mRNA_4611 0.65 +1.2
585,561 + 12979 mRNA_4611 0.66 -0.7
585,627 - 12979 mRNA_4611 0.67 +0.2
586,045 - 12979 mRNA_4611 0.73 +0.3
586,051 + 12979 mRNA_4611 0.73 +0.4
586,166 - 12979 mRNA_4611 0.75 +0.5
586,626 - 12979 mRNA_4611 0.81 -0.8
586,709 + 12979 mRNA_4611 0.83 +0.1
586,743 - 12979 mRNA_4611 0.83 -0.6
587,186 - 12979 mRNA_4611 0.90 -1.2
587,331 + +0.8
587,640 - +0.8
587,930 - +0.2
588,066 - -0.9
588,070 - -0.2
588,076 - +2.3
588,098 - +2.0
588,174 - +0.9
588,176 + -0.8
588,195 - -0.8
588,250 - +0.2
588,258 - +0.6
588,259 - +0.5
588,285 + -1.0
588,311 + +0.0
588,318 + +0.3
588,320 - +0.6
588,330 - -0.4
588,330 + +0.2
588,347 - +0.1
588,366 - +0.0
588,384 + -0.4
588,385 - -0.1
588,389 + -2.3
588,392 - -0.9
588,402 + -0.1
588,408 + +0.0
588,416 - +1.1
588,421 + +1.0
588,424 - -0.2
588,487 + +1.4
588,538 - +0.1
588,540 - -0.5
588,543 + -0.5
588,545 + -0.2
588,546 + +0.1
588,607 - +1.9
588,609 - -0.5
588,610 + +0.1
588,708 - -0.4
588,712 - -0.6
588,715 + -0.1
588,717 + -0.1
588,767 - -0.2
588,779 - +0.1
588,839 - +0.4
588,857 - +1.5
588,865 + -0.0

Or see this region's nucleotide sequence