Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4643

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13010 and 13011 are separated by 86 nucleotides13011 and 13012 are separated by 944 nucleotides mRNA_4642: 13010 - Hypothetical Protein, at 673,757 to 675,763 13010 mRNA_4643: 13011 - Hypothetical Protein, at 675,850 to 678,539 13011 mRNA_4644: 13012 - Hypothetical Protein, at 679,484 to 680,110 13012

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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674,940 - 13010 mRNA_4642 0.59 -1.5
675,240 + 13010 mRNA_4642 0.74 -2.1
675,471 - 13010 mRNA_4642 0.85 -0.4
675,530 - 13010 mRNA_4642 0.88 +0.6
675,633 + -1.0
675,657 - +0.1
675,815 + -0.6
675,904 + +0.5
675,915 - +0.3
676,084 + +0.3
676,181 - 13011 mRNA_4643 0.12 -1.9
676,373 - 13011 mRNA_4643 0.19 +0.7
676,560 - 13011 mRNA_4643 0.26 -0.5
676,800 + 13011 mRNA_4643 0.35 -1.3
676,807 + 13011 mRNA_4643 0.36 -0.5
676,837 + 13011 mRNA_4643 0.37 +1.1
677,159 + 13011 mRNA_4643 0.49 +0.2
677,252 - 13011 mRNA_4643 0.52 +0.2
677,717 + 13011 mRNA_4643 0.69 -0.5
677,776 + 13011 mRNA_4643 0.72 +1.3
678,037 + 13011 mRNA_4643 0.81 +2.5
678,042 + 13011 mRNA_4643 0.81 -0.7
678,158 - 13011 mRNA_4643 0.86 +1.8
678,450 - -0.9
679,080 - +0.9

Or see this region's nucleotide sequence