Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4735

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13102 and 13103 are separated by 484 nucleotides13103 and 13104 are separated by 103 nucleotides mRNA_4734: 13102 - Hypothetical Protein, at 883,185 to 884,845 13102 mRNA_4735: 13103 - K03654 recQ ATP-dependent DNA helicase RecQ, at 885,330 to 888,560 13103 mRNA_4736: 13104 - K02503 HINT1, hinT, hit histidine triad (HIT) family protein, at 888,664 to 889,665 13104

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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884,338 - 13102 mRNA_4734 0.69 +1.0
884,713 - -0.6
884,958 + +0.8
885,041 - +1.0
885,160 - +0.1
885,162 - +1.3
885,165 + +1.1
885,179 - -0.2
885,445 + +0.6
885,462 - -0.2
885,469 - +1.2
885,489 + -2.4
885,597 - +0.7
885,601 - +1.4
885,606 + -0.5
885,613 + +0.1
885,620 + -0.1
885,627 + +0.5
885,650 + -0.1
885,790 - 13103 mRNA_4735 0.14 +2.9
885,812 + 13103 mRNA_4735 0.15 -1.0
885,927 + 13103 mRNA_4735 0.18 -0.6
885,937 - 13103 mRNA_4735 0.19 -2.1
886,010 - 13103 mRNA_4735 0.21 +0.1
886,011 + 13103 mRNA_4735 0.21 +0.1
886,044 + 13103 mRNA_4735 0.22 +0.8
886,061 + 13103 mRNA_4735 0.23 +0.9
886,204 - 13103 mRNA_4735 0.27 -0.2
886,512 - 13103 mRNA_4735 0.37 +0.6
886,639 + 13103 mRNA_4735 0.41 +0.1
886,791 - 13103 mRNA_4735 0.45 +1.0
886,805 - 13103 mRNA_4735 0.46 +1.7
886,827 + 13103 mRNA_4735 0.46 +2.7
887,103 - 13103 mRNA_4735 0.55 +0.6
887,127 - 13103 mRNA_4735 0.56 +0.0
887,208 - 13103 mRNA_4735 0.58 +0.2
887,338 - 13103 mRNA_4735 0.62 -0.1
887,625 - 13103 mRNA_4735 0.71 +0.7
887,819 + 13103 mRNA_4735 0.77 +1.1
887,840 - 13103 mRNA_4735 0.78 -1.1
887,900 + 13103 mRNA_4735 0.80 -0.4
887,904 + 13103 mRNA_4735 0.80 +0.7
887,945 + 13103 mRNA_4735 0.81 +0.8
887,946 - 13103 mRNA_4735 0.81 +0.4
888,080 - 13103 mRNA_4735 0.85 -1.9
888,117 - 13103 mRNA_4735 0.86 -0.5
888,121 + 13103 mRNA_4735 0.86 +0.6
888,396 + +0.8
888,397 - +0.8
888,534 + -0.3
888,573 - -0.9
888,587 + +0.4
888,817 - 13104 mRNA_4736 0.15 +0.0
889,039 + 13104 mRNA_4736 0.37 +1.2
889,192 - 13104 mRNA_4736 0.53 -0.4
889,282 - 13104 mRNA_4736 0.62 +0.1
889,296 + 13104 mRNA_4736 0.63 -0.5
889,297 - 13104 mRNA_4736 0.63 +0.9
889,301 - 13104 mRNA_4736 0.64 +0.2
889,319 + 13104 mRNA_4736 0.65 +0.8
889,440 + 13104 mRNA_4736 0.77 +0.7

Or see this region's nucleotide sequence