Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4750

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13117 and 13118 are separated by 296 nucleotides13118 and 13119 are separated by 288 nucleotides mRNA_4749: 13117 - SUPERFAMILY--SSF52047, at 917,502 to 919,114 13117 mRNA_4750: 13118 - Hypothetical Protein, at 919,411 to 921,092 13118 mRNA_4751: 13119 - HMMPfam-NmrA-like family-PF05368,SUPERFAMILY--SSF51735, at 921,381 to 922,742 13119

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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918,412 - 13117 mRNA_4749 0.56 +1.5
918,704 - 13117 mRNA_4749 0.75 -0.6
918,823 - 13117 mRNA_4749 0.82 +0.6
918,858 + 13117 mRNA_4749 0.84 +1.4
918,899 - 13117 mRNA_4749 0.87 +2.3
919,121 + +2.1
919,141 - -0.0
919,155 + -0.0
919,330 + +1.5
919,335 - -0.4
919,451 - +1.4
919,462 + +2.1
919,468 - -0.2
919,471 + -0.4
919,581 + 13118 mRNA_4750 0.10 +1.9
919,870 - 13118 mRNA_4750 0.27 -0.0
919,871 - 13118 mRNA_4750 0.27 +0.9
920,913 - 13118 mRNA_4750 0.89 -0.0
920,933 - +0.5
920,969 - -0.3
921,040 - +1.0
921,064 - -0.2
921,209 + +0.4
921,260 + +2.9
921,337 + -1.3
921,346 - +0.0
921,372 - -0.3
921,373 + -0.6
921,504 - -0.2
921,518 - 13119 mRNA_4751 0.10 -2.0
921,538 + 13119 mRNA_4751 0.12 -2.0
921,583 + 13119 mRNA_4751 0.15 -0.2
921,801 + 13119 mRNA_4751 0.31 -0.3
921,844 + 13119 mRNA_4751 0.34 -1.7
922,065 - 13119 mRNA_4751 0.50 +0.5

Or see this region's nucleotide sequence