Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4762

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13130 and 13131 are separated by 709 nucleotides mRNA_4762: 13130 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 946,790 to 947,960 13130 mRNA_4763: 13131 - KOG1263 Multicopper oxidases, at 948,670 to 952,404 13131

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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945,832 - +1.9
945,837 - -2.0
945,842 + +0.0
946,099 - -0.2
946,168 + +1.9
946,173 + +0.8
946,292 - +0.5
946,445 - -0.9
946,516 + -0.2
946,549 - -0.3
946,746 + +0.9
947,222 - 13130 mRNA_4762 0.37 +1.5
947,224 - 13130 mRNA_4762 0.37 +0.3
947,679 - 13130 mRNA_4762 0.76 -1.0
947,858 + +1.2
948,115 - -0.8
948,136 - +0.0
948,187 + +0.2
948,188 + -0.7
948,292 - +0.5
948,426 - -0.5
948,458 + +1.1
948,584 + -0.1

Or see this region's nucleotide sequence