Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4763

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13130 and 13131 are separated by 709 nucleotides mRNA_4762: 13130 - HMMPfam-Fungal cellulose binding domain-PF00734,ProSitePatterns-CBM1 (carbohydrate binding type-1) domain signature.-PS00562,ProSiteProfiles-CBM1 (carbohydrate binding type-1) domain profile.-PS51164,SMART-Fungal-type cellulose-binding domain-SM00236,SUPERFAMILY--SSF57180, at 946,790 to 947,960 13130 mRNA_4763: 13131 - KOG1263 Multicopper oxidases, at 948,670 to 952,404 13131

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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947,679 - 13130 mRNA_4762 0.76 -1.0
947,858 + +1.2
948,115 - -0.8
948,136 - +0.0
948,187 + +0.2
948,188 + -0.7
948,292 - +0.5
948,426 - -0.5
948,458 + +1.1
948,584 + -0.1
949,019 - +1.9
949,290 - 13131 mRNA_4763 0.17 -0.2
949,518 + 13131 mRNA_4763 0.23 +1.0
949,617 + 13131 mRNA_4763 0.25 -0.1
950,490 - 13131 mRNA_4763 0.49 +0.8
950,610 - 13131 mRNA_4763 0.52 +0.5
950,879 + 13131 mRNA_4763 0.59 +0.4
951,217 - 13131 mRNA_4763 0.68 -1.7
951,286 + 13131 mRNA_4763 0.70 -0.6
951,486 - 13131 mRNA_4763 0.75 -0.3
951,622 + 13131 mRNA_4763 0.79 +1.4
951,668 - 13131 mRNA_4763 0.80 -0.3
951,778 - 13131 mRNA_4763 0.83 -1.3
951,778 - 13131 mRNA_4763 0.83 -0.4
951,787 + 13131 mRNA_4763 0.83 -1.8
951,787 + 13131 mRNA_4763 0.83 +0.1
951,789 - 13131 mRNA_4763 0.84 +1.2
951,869 - 13131 mRNA_4763 0.86 -0.7
952,179 + +1.5
952,321 - +2.4
952,349 + +2.0
952,610 - -0.6
952,796 + +0.2
952,805 + +0.2
952,806 - +1.2
952,932 + +0.7
952,932 + -0.5
953,090 + +0.8
953,094 + -0.3
953,117 - -0.1
953,225 + +0.0
953,358 + +0.6
953,360 + +1.4
953,366 + +0.2
953,402 + -0.1

Or see this region's nucleotide sequence