Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4770

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13137 and 13138 are separated by 374 nucleotides13138 and 13139 are separated by 921 nucleotides mRNA_4769: 13137 - K01866 YARS, tyrS tyrosyl-tRNA synthetase, at 969,625 to 971,504 13137 mRNA_4770: 13138 - KOG0988 RNA-directed RNA polymerase QDE-1 required for posttranscriptional gene silencing and RNA interference, at 971,879 to 977,050 13138 mRNA_4771: 13139 - K20062 ART4_5_7 arrestin-related trafficking adapter 4/5/7, at 977,972 to 980,923 13139

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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971,678 + -0.2
971,843 - -0.0
971,857 + -0.9
971,991 - +1.1
972,007 + -0.4
972,262 - +0.1
972,538 - 13138 mRNA_4770 0.13 +0.7
972,554 - 13138 mRNA_4770 0.13 +2.6
972,587 + 13138 mRNA_4770 0.14 -0.5
972,706 - 13138 mRNA_4770 0.16 -0.8
972,725 - 13138 mRNA_4770 0.16 +0.7
972,746 - 13138 mRNA_4770 0.17 +1.4
972,749 + 13138 mRNA_4770 0.17 +1.1
972,977 - 13138 mRNA_4770 0.21 +0.2
973,000 - 13138 mRNA_4770 0.22 +0.6
973,147 + 13138 mRNA_4770 0.25 -1.3
973,168 - 13138 mRNA_4770 0.25 +0.5
973,500 - 13138 mRNA_4770 0.31 +0.1
973,691 - 13138 mRNA_4770 0.35 +0.0
973,805 - 13138 mRNA_4770 0.37 +1.4
974,125 + 13138 mRNA_4770 0.43 +0.9
974,395 + 13138 mRNA_4770 0.49 +0.3
975,115 - 13138 mRNA_4770 0.63 -0.2
975,124 - 13138 mRNA_4770 0.63 +0.6
975,130 + 13138 mRNA_4770 0.63 -0.2
975,275 - 13138 mRNA_4770 0.66 +0.1
975,296 - 13138 mRNA_4770 0.66 -0.9
975,390 - 13138 mRNA_4770 0.68 -1.3
975,443 - 13138 mRNA_4770 0.69 -0.4
975,466 - 13138 mRNA_4770 0.69 +0.6
975,572 + 13138 mRNA_4770 0.71 +0.3
975,594 + 13138 mRNA_4770 0.72 +0.5
975,708 - 13138 mRNA_4770 0.74 -0.2
975,862 - 13138 mRNA_4770 0.77 -0.0
976,044 + 13138 mRNA_4770 0.81 -0.6
976,121 + 13138 mRNA_4770 0.82 +0.6
976,314 + 13138 mRNA_4770 0.86 -0.5
976,449 + 13138 mRNA_4770 0.88 -1.0
976,472 - 13138 mRNA_4770 0.89 +1.0
976,476 - 13138 mRNA_4770 0.89 +0.1
976,508 + 13138 mRNA_4770 0.90 +0.8
976,634 - -0.3
976,794 + +0.3
976,795 + -0.2
976,902 + +0.7
976,924 + +0.7
977,100 + +0.0
977,145 - +0.3
977,209 - -0.4
977,220 - +1.8
977,225 - +0.3
977,228 + +0.9
977,271 + +2.0
977,311 + +2.3
977,353 + +2.3
977,360 - +1.5
977,361 - +1.3
977,362 - +2.8
977,365 - +0.5
977,374 - +1.8
977,376 + +0.3
977,393 + +1.6
977,513 - -0.4
977,525 - -0.6
977,531 - +1.0
977,624 - +1.9
977,663 + -1.2

Or see this region's nucleotide sequence