Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4812

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13179 and 13180 are separated by 569 nucleotides13180 and 13181 are separated by 363 nucleotides mRNA_4811: 13179 - Hypothetical Protein, at 1,070,927 to 1,071,764 13179 mRNA_4812: 13180 - K15255 PIF1 ATP-dependent DNA helicase PIF1, at 1,072,334 to 1,073,346 13180 mRNA_4813: 13181 - Hypothetical Protein, at 1,073,710 to 1,074,508 13181

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,071,966 - -0.8
1,072,014 - +0.5
1,072,103 + +1.1
1,072,146 + +0.6
1,072,695 - 13180 mRNA_4812 0.36 +0.4
1,072,747 + 13180 mRNA_4812 0.41 +1.6
1,073,143 + 13180 mRNA_4812 0.80 -0.1
1,073,150 + 13180 mRNA_4812 0.81 -1.8
1,073,153 - 13180 mRNA_4812 0.81 -1.2
1,073,344 - -2.2
1,073,406 - -0.2
1,073,432 + +1.6
1,073,461 + -0.8
1,073,943 + 13181 mRNA_4813 0.29 +0.4
1,074,173 - 13181 mRNA_4813 0.58 +2.0

Or see this region's nucleotide sequence