Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4826

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13193 and 13194 are separated by 172 nucleotides13194 and 13195 are separated by 403 nucleotides mRNA_4825: 13193 - Hypothetical Protein, at 1,097,329 to 1,098,852 13193 mRNA_4826: 13194 - SUPERFAMILY--SSF52047, at 1,099,025 to 1,100,594 13194 mRNA_4827: 13195 - Hypothetical Protein, at 1,100,998 to 1,102,554 13195

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,098,203 + 13193 mRNA_4825 0.57 -0.6
1,098,340 + 13193 mRNA_4825 0.66 +0.6
1,098,422 + 13193 mRNA_4825 0.72 +1.0
1,098,637 - 13193 mRNA_4825 0.86 -1.0
1,098,809 - -0.8
1,099,025 - +0.3
1,099,159 - +0.5
1,099,198 - 13194 mRNA_4826 0.11 -0.2
1,099,406 - 13194 mRNA_4826 0.24 -0.8
1,099,492 - 13194 mRNA_4826 0.30 +1.3
1,099,672 - 13194 mRNA_4826 0.41 -0.9
1,099,783 + 13194 mRNA_4826 0.48 +0.1
1,100,115 - 13194 mRNA_4826 0.69 +1.7
1,100,364 + 13194 mRNA_4826 0.85 +0.2
1,100,544 + +1.7
1,100,686 - +0.6
1,100,832 - +0.0
1,101,002 + -0.8
1,101,012 - -1.2
1,101,050 - -1.3
1,101,118 + +1.8
1,101,132 - +0.6
1,101,152 + -1.7
1,101,347 - 13195 mRNA_4827 0.22 -0.3
1,101,456 - 13195 mRNA_4827 0.29 +0.6

Or see this region's nucleotide sequence