Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4847

Experiment: YNB Methylricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13214 and 13215 are separated by 253 nucleotides13215 and 13216 are separated by 50 nucleotides mRNA_4846: 13214 - K03943 NDUFV2 NADH dehydrogenase (ubiquinone) flavoprotein 2, at 1,132,189 to 1,133,318 13214 mRNA_4847: 13215 - Hypothetical Protein, at 1,133,572 to 1,137,413 13215 mRNA_4848: 13216 - Hypothetical Protein, at 1,137,464 to 1,141,122 13216

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
remove
1,133,344 - +0.0
1,133,353 + +2.2
1,133,379 - -1.3
1,133,450 + -0.0
1,133,454 - +0.7
1,133,507 + +1.8
1,133,509 - +0.2
1,133,510 + +0.3
1,133,643 + +0.9
1,133,670 + +0.2
1,133,784 - -0.3
1,133,800 + +0.2
1,133,814 - -0.5
1,133,847 - +0.5
1,134,076 - 13215 mRNA_4847 0.13 +0.5
1,134,087 + 13215 mRNA_4847 0.13 +0.3
1,134,285 - 13215 mRNA_4847 0.19 +0.9
1,134,346 + 13215 mRNA_4847 0.20 +0.8
1,134,386 - 13215 mRNA_4847 0.21 +0.0
1,134,540 + 13215 mRNA_4847 0.25 -1.0
1,134,545 - 13215 mRNA_4847 0.25 -0.7
1,134,572 - 13215 mRNA_4847 0.26 +0.7
1,134,585 - 13215 mRNA_4847 0.26 +0.6
1,134,593 + 13215 mRNA_4847 0.27 +1.4
1,134,593 + 13215 mRNA_4847 0.27 +1.2
1,134,602 + 13215 mRNA_4847 0.27 +0.6
1,134,948 - 13215 mRNA_4847 0.36 -0.4
1,135,097 + 13215 mRNA_4847 0.40 +0.5
1,135,240 - 13215 mRNA_4847 0.43 -0.2
1,135,258 - 13215 mRNA_4847 0.44 -0.4
1,135,268 + 13215 mRNA_4847 0.44 +1.5
1,135,278 + 13215 mRNA_4847 0.44 -0.5
1,135,283 - 13215 mRNA_4847 0.45 -0.6
1,135,290 + 13215 mRNA_4847 0.45 -0.3
1,135,424 - 13215 mRNA_4847 0.48 -0.4
1,135,451 + 13215 mRNA_4847 0.49 -0.9
1,135,478 + 13215 mRNA_4847 0.50 -0.6
1,135,568 + 13215 mRNA_4847 0.52 -0.6
1,135,584 + 13215 mRNA_4847 0.52 +0.0
1,135,593 + 13215 mRNA_4847 0.53 -1.3
1,135,739 - 13215 mRNA_4847 0.56 +0.6
1,135,855 + 13215 mRNA_4847 0.59 -0.6
1,135,867 - 13215 mRNA_4847 0.60 +0.3
1,136,043 - 13215 mRNA_4847 0.64 -0.0
1,136,207 - 13215 mRNA_4847 0.69 -0.1
1,136,309 - 13215 mRNA_4847 0.71 +2.5
1,136,314 + 13215 mRNA_4847 0.71 +0.2
1,136,417 - 13215 mRNA_4847 0.74 -0.1
1,136,914 + 13215 mRNA_4847 0.87 -0.0
1,136,914 + 13215 mRNA_4847 0.87 -0.1
1,136,917 + 13215 mRNA_4847 0.87 +0.2
1,137,042 - -1.5
1,137,058 + +0.5
1,137,072 - -0.2
1,137,087 + -1.6
1,137,158 + -1.1
1,137,196 - -2.0
1,137,204 + +0.0
1,137,215 + -1.6
1,137,235 + -2.4
1,137,336 - +1.2
1,137,347 - -0.6
1,137,533 + +0.6
1,137,632 - -0.1
1,137,903 - 13216 mRNA_4848 0.12 +1.8
1,137,920 - 13216 mRNA_4848 0.12 -0.1
1,137,925 + 13216 mRNA_4848 0.13 +0.3
1,138,065 - 13216 mRNA_4848 0.16 +0.8
1,138,077 + 13216 mRNA_4848 0.17 +0.1
1,138,083 - 13216 mRNA_4848 0.17 +1.8
1,138,165 + 13216 mRNA_4848 0.19 -0.5
1,138,165 - 13216 mRNA_4848 0.19 +0.1
1,138,231 + 13216 mRNA_4848 0.21 +0.2
1,138,350 + 13216 mRNA_4848 0.24 -1.1

Or see this region's nucleotide sequence