Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4909

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13276 and 13277 are separated by 495 nucleotides13277 and 13278 are separated by 350 nucleotides mRNA_4908: 13276 - K15163 SRB8, MED12 mediator of RNA polymerase II transcription subunit 12, fungi type, at 1,275,228 to 1,281,484 13276 mRNA_4909: 13277 - KOG1339 Aspartyl protease, at 1,281,980 to 1,284,451 13277 mRNA_4910: 13278 - K14555 UTP13, TBL3 U3 small nucleolar RNA-associated protein 13, at 1,284,802 to 1,288,001 13278

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,280,997 - -0.8
1,281,121 - +0.4
1,281,136 + -0.3
1,281,264 - -1.8
1,281,276 + +0.7
1,281,531 + -0.1
1,281,532 - +1.1
1,281,541 - -0.7
1,281,543 - +2.2
1,281,545 - +0.2
1,281,554 + -0.4
1,281,555 - +0.7
1,281,560 - +1.2
1,281,702 - +0.2
1,281,707 - -0.2
1,281,712 + -0.1
1,281,714 - -1.5
1,281,714 - +0.7
1,281,716 + -0.1
1,281,717 + +0.7
1,281,718 + +1.0
1,281,758 - +0.1
1,281,758 - +1.9
1,281,760 - -0.2
1,281,760 + -0.4
1,281,760 + +0.6
1,281,765 - +1.3
1,281,773 - -0.3
1,281,779 + -0.2
1,281,789 + -0.5
1,281,795 + +1.4
1,281,890 - +0.1
1,282,041 - -0.2
1,282,045 - -0.1
1,282,049 + -0.1
1,282,049 - -0.2
1,282,051 + -1.1
1,282,160 - -0.3
1,282,194 - -0.3
1,282,201 - +1.1
1,282,204 + -0.7
1,282,205 - +0.2
1,282,339 - 13277 mRNA_4909 0.15 +0.7
1,282,352 - 13277 mRNA_4909 0.15 +0.2
1,282,370 + 13277 mRNA_4909 0.16 +0.5
1,282,516 + 13277 mRNA_4909 0.22 -0.7
1,282,536 - 13277 mRNA_4909 0.22 -0.4
1,282,651 - 13277 mRNA_4909 0.27 +0.9
1,282,659 + 13277 mRNA_4909 0.27 +0.5
1,282,927 - 13277 mRNA_4909 0.38 +0.1
1,282,954 - 13277 mRNA_4909 0.39 -1.2
1,282,990 + 13277 mRNA_4909 0.41 -1.9
1,283,111 - 13277 mRNA_4909 0.46 +0.5
1,283,151 - 13277 mRNA_4909 0.47 -0.4
1,283,414 - 13277 mRNA_4909 0.58 +0.5
1,283,442 + 13277 mRNA_4909 0.59 -0.5
1,283,486 + 13277 mRNA_4909 0.61 -0.2
1,283,531 - 13277 mRNA_4909 0.63 +0.3
1,284,103 - 13277 mRNA_4909 0.86 +0.1
1,284,111 + 13277 mRNA_4909 0.86 +0.1
1,284,112 - 13277 mRNA_4909 0.86 +0.7
1,284,656 - -0.9
1,284,657 - +0.1
1,284,707 - +0.1
1,284,826 - -0.3
1,285,372 + 13278 mRNA_4910 0.18 -3.5

Or see this region's nucleotide sequence