Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4914

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13281 and 13282 are separated by 790 nucleotides13282 and 13283 are separated by 568 nucleotides mRNA_4913: 13281 - HMMPfam-Spermine/spermidine synthase-PF01564,ProSiteProfiles-Polyamine biosynthesis (PABS) domain profile.-PS51006,SUPERFAMILY--SSF53335, at 1,291,669 to 1,293,879 13281 mRNA_4914: 13282 - KOG0039 Ferric reductase, NADH/NADPH oxidase and related proteins, at 1,294,670 to 1,297,098 13282 mRNA_4915: 13283 - HMMPfam-Complex1_LYR-like-PF13233, at 1,297,667 to 1,298,264 13283

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,293,835 + +0.2
1,293,989 + +1.9
1,294,553 + +0.0
1,295,400 - 13282 mRNA_4914 0.30 +0.2
1,296,411 - 13282 mRNA_4914 0.72 -0.8
1,296,881 + -1.6
1,296,896 + -0.1
1,297,122 - +1.1
1,297,313 - -1.5
1,297,333 + +1.2
1,297,337 + +0.0
1,297,350 - -0.7
1,297,595 - +1.2
1,297,598 + -1.3
1,297,605 - -0.2
1,297,606 - +0.3
1,297,626 + -2.2
1,297,641 - -0.1
1,298,067 + 13283 mRNA_4915 0.67 +1.4

Or see this region's nucleotide sequence