Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4972

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13339 and 13340 are separated by 914 nucleotides13340 and 13341 are separated by 388 nucleotides mRNA_4971: 13339 - BLAST transmembrane protein, putative [Rhizoctonia solani A..., at 1,447,089 to 1,449,047 13339 mRNA_4972: 13340 - KOG0085 G protein subunit Galphaq/Galphay, small G protein superfamily, at 1,449,962 to 1,451,515 13340 mRNA_4973: 13341 - K18466 VPS26 vacuolar protein sorting-associated protein 26, at 1,451,904 to 1,453,549 13341

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,449,715 - -2.1
1,449,827 + +0.7
1,449,880 + -0.5
1,450,324 - 13340 mRNA_4972 0.23 -0.5
1,450,439 - 13340 mRNA_4972 0.31 +0.9
1,450,717 - 13340 mRNA_4972 0.49 +1.1
1,450,990 - 13340 mRNA_4972 0.66 -0.1
1,451,156 - 13340 mRNA_4972 0.77 -0.7
1,451,193 - 13340 mRNA_4972 0.79 -2.1
1,451,207 - 13340 mRNA_4972 0.80 +0.1
1,451,282 - 13340 mRNA_4972 0.85 -0.3
1,451,318 + 13340 mRNA_4972 0.87 +1.0
1,451,525 + +0.1
1,451,530 - -0.3
1,451,558 - +0.1
1,451,715 + +0.2
1,451,729 + +0.6
1,451,870 + -0.8

Or see this region's nucleotide sequence