Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4984

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13351 and 13352 are separated by 173 nucleotides13352 and 13353 are separated by 304 nucleotides mRNA_4983: 13351 - SUPERFAMILY--SSF48371, at 1,473,284 to 1,476,238 13351 mRNA_4984: 13352 - HMMPfam-OsmC-like protein-PF02566,SUPERFAMILY--SSF82784, at 1,476,412 to 1,477,119 13352 mRNA_4985: 13353 - BLAST vps9 domain protein [Zymoseptoria brevis], at 1,477,424 to 1,478,250 13353

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,475,414 - 13351 mRNA_4983 0.72 -2.7
1,475,419 + 13351 mRNA_4983 0.72 -1.0
1,475,850 - 13351 mRNA_4983 0.87 -2.8
1,476,414 + -0.3
1,476,442 + +0.7
1,476,782 + 13352 mRNA_4984 0.52 -0.2
1,477,001 + 13352 mRNA_4984 0.83 -0.9
1,477,033 + 13352 mRNA_4984 0.88 -0.4
1,477,123 - -0.7
1,477,134 - +0.3
1,477,135 - -0.4
1,477,135 - +0.8
1,477,143 + +2.3
1,477,143 - +0.1
1,477,167 + +0.4
1,477,167 - -0.5
1,477,177 - +1.8
1,477,196 + -0.2
1,477,255 - +0.3
1,477,337 - -0.3
1,477,351 + +0.7
1,477,356 + +0.4
1,477,471 - +0.0
1,477,494 + -0.4
1,477,625 - 13353 mRNA_4985 0.24 -0.2
1,478,095 - 13353 mRNA_4985 0.81 +1.1

Or see this region's nucleotide sequence