Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4986

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13353 and 13354 are separated by 643 nucleotides13354 and 13355 are separated by 503 nucleotides mRNA_4985: 13353 - BLAST vps9 domain protein [Zymoseptoria brevis], at 1,477,424 to 1,478,250 13353 mRNA_4986: 13354 - K17943 PUM pumilio RNA-binding family, at 1,478,894 to 1,482,308 13354 mRNA_4987: 13355 - Hypothetical Protein, at 1,482,812 to 1,483,516 13355

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,478,095 - 13353 mRNA_4985 0.81 +1.1
1,478,185 + -1.3
1,478,219 + +1.4
1,478,384 + -0.3
1,478,820 + +0.0
1,479,043 + +0.3
1,479,118 - +0.0
1,480,324 + 13354 mRNA_4986 0.42 +0.2
1,480,734 - 13354 mRNA_4986 0.54 +0.4
1,480,776 - 13354 mRNA_4986 0.55 -1.1
1,480,778 + 13354 mRNA_4986 0.55 -2.4
1,480,867 + 13354 mRNA_4986 0.58 -0.4
1,481,640 - 13354 mRNA_4986 0.80 +0.0
1,481,774 + 13354 mRNA_4986 0.84 +0.7
1,481,880 - 13354 mRNA_4986 0.87 -0.6
1,482,071 - +0.2
1,482,205 - +0.3
1,482,207 + -0.9
1,482,234 - +0.5
1,482,366 + -0.8
1,482,393 + +1.2
1,482,496 - +0.0
1,482,497 + +0.9
1,482,549 - +0.4
1,482,551 - +2.1
1,482,691 + +0.5
1,482,785 + +0.3
1,482,801 - -0.6
1,482,803 + -0.3
1,482,807 + +0.1
1,482,821 + +0.4
1,482,948 + 13355 mRNA_4987 0.19 -1.1
1,482,969 + 13355 mRNA_4987 0.22 +0.3
1,482,969 + 13355 mRNA_4987 0.22 +0.2
1,483,004 + 13355 mRNA_4987 0.27 +0.5
1,483,114 + 13355 mRNA_4987 0.43 +0.1
1,483,116 - 13355 mRNA_4987 0.43 +1.0
1,483,117 + 13355 mRNA_4987 0.43 +0.8
1,483,122 - 13355 mRNA_4987 0.44 +0.6
1,483,127 + 13355 mRNA_4987 0.45 -0.4
1,483,131 + 13355 mRNA_4987 0.45 +0.9
1,483,132 + 13355 mRNA_4987 0.45 +0.9
1,483,142 + 13355 mRNA_4987 0.47 +0.0
1,483,146 + 13355 mRNA_4987 0.47 -0.9
1,483,155 - 13355 mRNA_4987 0.49 +1.0
1,483,162 - 13355 mRNA_4987 0.50 +0.5
1,483,194 - 13355 mRNA_4987 0.54 -0.8
1,483,197 - 13355 mRNA_4987 0.55 +0.4
1,483,259 + 13355 mRNA_4987 0.63 +2.0

Or see this region's nucleotide sequence