Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5037

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13404 and 13405 are separated by 387 nucleotides13405 and 13406 are separated by 983 nucleotides mRNA_5036: 13404 - Hypothetical Protein, at 1,610,086 to 1,610,551 13404 mRNA_5037: 13405 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1,610,939 to 1,612,058 13405 mRNA_5038: 13406 - Hypothetical Protein, at 1,613,042 to 1,613,500 13406

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,610,184 - 13404 mRNA_5036 0.21 +0.1
1,610,205 + 13404 mRNA_5036 0.26 -0.3
1,610,209 + 13404 mRNA_5036 0.26 -0.8
1,610,230 + 13404 mRNA_5036 0.31 -0.8
1,610,298 - 13404 mRNA_5036 0.45 +2.4
1,610,351 + 13404 mRNA_5036 0.57 -0.1
1,610,355 + 13404 mRNA_5036 0.58 +0.1
1,610,465 - 13404 mRNA_5036 0.81 -1.1
1,610,608 - +2.1
1,610,611 + +1.3
1,610,616 - +1.0
1,610,625 - -1.0
1,610,633 - -0.6
1,610,670 - +0.2
1,610,747 - +0.1
1,610,769 - +1.4
1,610,817 + +0.5
1,610,826 + +0.9
1,610,957 + -1.3
1,610,982 - +0.7
1,611,062 + 13405 mRNA_5037 0.11 +0.6
1,611,363 - 13405 mRNA_5037 0.38 -0.7
1,611,364 + 13405 mRNA_5037 0.38 -1.3
1,611,575 + 13405 mRNA_5037 0.57 -1.5
1,611,754 - 13405 mRNA_5037 0.73 +1.2
1,611,789 - 13405 mRNA_5037 0.76 +1.2
1,611,811 + 13405 mRNA_5037 0.78 +0.6
1,611,933 + 13405 mRNA_5037 0.89 +0.5
1,611,953 - -0.2
1,611,961 - +0.8
1,612,099 + -0.8
1,612,102 + -1.1
1,612,106 + -4.1
1,612,142 - +0.4
1,612,225 - -0.3
1,612,228 + -0.6
1,612,234 + +1.4
1,612,235 + -0.9
1,612,237 + -0.2
1,612,247 - +0.2
1,612,248 - -0.2
1,612,251 + +0.2
1,612,255 + +0.0
1,612,331 + -0.0
1,612,348 + +0.8
1,612,348 + +0.6
1,612,349 - +0.1
1,612,350 + -0.5
1,612,360 + +0.1
1,612,397 - +2.0
1,612,493 + +0.5
1,612,507 + +0.4
1,612,639 - +1.6
1,612,646 - -0.2
1,612,657 - -0.3
1,612,795 - +0.1
1,612,798 + +1.5
1,612,817 - -0.1
1,612,820 - +0.3
1,612,968 - -0.7
1,612,985 + -1.5

Or see this region's nucleotide sequence