Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5048

Experiment: YNB Methylricinoleic Acid

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13415 and 13416 are separated by 339 nucleotides13416 and 13417 are separated by 192 nucleotides mRNA_5047: 13415 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1,631,648 to 1,632,435 13415 mRNA_5048: 13416 - HMMPfam-Animal haem peroxidase-PF03098,ProSiteProfiles-Animal heme peroxidase superfamily profile.-PS50292,SUPERFAMILY--SSF48113, at 1,632,775 to 1,633,418 13416 mRNA_5049: 13417 - HMMPfam-Cytochrome P450-PF00067,SUPERFAMILY--SSF48264, at 1,633,611 to 1,634,725 13417

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
remove
1,631,903 + 13415 mRNA_5047 0.32 -0.6
1,632,007 - 13415 mRNA_5047 0.46 +1.2
1,632,217 - 13415 mRNA_5047 0.72 +0.5
1,632,339 - 13415 mRNA_5047 0.88 -0.5
1,632,346 - 13415 mRNA_5047 0.89 +0.0
1,632,366 + -0.2
1,632,367 - -0.5
1,632,383 + -0.4
1,632,395 - -0.6
1,632,426 - +0.5
1,632,476 - +0.6
1,632,567 - -0.6
1,632,579 - -0.8
1,632,591 + -0.8
1,632,815 - +1.7
1,632,848 - 13416 mRNA_5048 0.11 +3.1
1,632,932 - 13416 mRNA_5048 0.24 -1.0
1,633,130 + 13416 mRNA_5048 0.55 +2.5
1,633,371 - -0.6

Or see this region's nucleotide sequence