Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5087

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13454 and 13455 are separated by 584 nucleotides mRNA_5086: 13454 - Hypothetical Protein, at 1,718,899 to 1,719,393 13454 mRNA_5087: 13455 - K06890 K06890 uncharacterized protein, at 1,719,978 to 1,721,212 13455

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,719,043 - 13454 mRNA_5086 0.29 +0.2
1,719,654 + +0.5
1,719,663 + -0.1
1,719,680 + +0.0
1,719,780 - +1.8
1,719,794 + +1.2
1,719,813 + +2.5
1,719,838 + +0.3
1,719,850 - -0.5
1,719,938 - -0.2
1,720,079 + +0.1
1,720,247 + 13455 mRNA_5087 0.22 +0.2
1,720,259 + 13455 mRNA_5087 0.23 -1.5
1,720,664 - 13455 mRNA_5087 0.56 -0.5
1,720,978 - 13455 mRNA_5087 0.81 +1.5
1,721,410 + +1.4
1,721,428 - -2.3
1,721,846 + +0.1
1,722,153 - -0.2

Or see this region's nucleotide sequence