Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5120

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13487 and 13488 are separated by 879 nucleotides13488 and 13489 are separated by 351 nucleotides mRNA_5119: 13487 - HMMPfam-LysM domain-PF01476,SMART-Lysin motif-SM00257,SUPERFAMILY--SSF54106, at 1,804,045 to 1,805,977 13487 mRNA_5120: 13488 - K11279 NAP1L1, NRP nucleosome assembly protein 1-like 1, at 1,806,857 to 1,808,752 13488 mRNA_5121: 13489 - K01137 GNS N-acetylglucosamine-6-sulfatase, at 1,809,104 to 1,811,514 13489

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,805,898 - -0.5
1,805,900 - +0.2
1,805,905 + -0.3
1,806,051 - +1.7
1,806,071 - +0.8
1,806,088 - -1.6
1,806,177 - +0.9
1,806,378 + +0.7
1,806,786 + +2.9
1,806,804 - +1.0
1,808,867 + +1.1
1,808,911 - +0.5
1,808,986 + +0.8
1,809,596 + 13489 mRNA_5121 0.20 -0.3

Or see this region's nucleotide sequence