Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5130

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13497 and 13498 are separated by 662 nucleotides13498 and 13499 are separated by 166 nucleotides mRNA_5129: 13497 - Hypothetical Protein, at 1,827,206 to 1,828,600 13497 mRNA_5130: 13498 - Hypothetical Protein, at 1,829,263 to 1,829,910 13498 mRNA_5131: 13499 - Hypothetical Protein, at 1,830,077 to 1,833,638 13499

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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1,828,479 - -1.0
1,828,505 + +1.5
1,828,513 + -1.3
1,828,644 - +0.4
1,828,785 + +2.4
1,828,789 + -0.5
1,828,802 - +0.0
1,828,811 + +0.5
1,828,959 + +0.3
1,829,136 + -0.8
1,829,249 + +0.3
1,829,696 + 13498 mRNA_5130 0.67 +1.4
1,829,953 + +1.2
1,829,966 + -2.6
1,830,093 - +0.3
1,830,267 - +0.5
1,830,597 - 13499 mRNA_5131 0.15 -1.2
1,830,597 - 13499 mRNA_5131 0.15 +1.8
1,830,680 - 13499 mRNA_5131 0.17 +0.5

Or see this region's nucleotide sequence