Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5195

Experiment: YNB Methylricinoleic Acid

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertions' strand. Conventionally, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

500 nt 13562 and 13563 are separated by 697 nucleotides13563 and 13564 are separated by 434 nucleotides mRNA_5194: 13562 - K00002 AKR1A1, adh alcohol dehydrogenase (NADP+), at 122,774 to 124,635 13562 mRNA_5195: 13563 - KOG0814 Glyoxylase, at 125,333 to 126,456 13563 mRNA_5196: 13564 - K17218 sqr sulfide-quinone oxidoreductase, at 126,891 to 128,997 13564

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Methylricinoleic Acid
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124,511 - -0.7
124,556 - -0.1
124,583 - -0.6
124,586 - -0.8
124,591 - -0.7
124,616 + +0.4
124,624 - +0.5
124,645 + -0.4
124,732 - +1.8
124,773 + -0.7
124,775 + -1.5
124,775 + -0.2
124,776 - -0.2
124,781 + -0.3
124,784 - +0.8
124,788 + +1.1
124,798 + +0.3
124,798 + -0.2
124,801 - -1.1
124,803 + +0.6
124,805 - +0.1
124,807 + +0.6
124,812 + +0.3
124,896 + -1.4
124,927 + -1.6
124,941 - -0.7
124,961 - +0.0
124,963 + -0.6
124,968 - -0.4
124,968 + -0.5
124,968 + +1.3
124,970 - -0.8
124,972 + +0.6
124,975 + +0.5
124,983 + +0.4
124,984 + +1.3
125,005 - -0.0
125,016 + -1.1
125,040 - -0.2
125,043 - -1.3
125,050 + -1.2
125,223 + -0.3
125,227 + -0.6
125,665 + 13563 mRNA_5195 0.30 +0.3
125,668 + 13563 mRNA_5195 0.30 +0.6
125,816 - 13563 mRNA_5195 0.43 +0.9
125,816 + 13563 mRNA_5195 0.43 +0.2
125,957 - 13563 mRNA_5195 0.56 +1.0
126,343 + 13563 mRNA_5195 0.90 -0.1
126,364 + +0.5
126,411 - -1.1
126,498 - -1.2
126,511 + -0.2
126,518 - +0.7
126,524 - -1.1
126,532 + +0.0
126,540 + -1.2
126,540 + -0.4
126,668 + -0.2
126,684 - +0.6
126,695 + +2.2
126,697 + +0.4
126,704 + -2.5
126,711 - -0.1
126,810 - -0.7
126,816 - +0.1
126,817 + +0.6
126,839 + -2.7
126,924 + +1.6
127,006 + -0.5
127,171 + 13564 mRNA_5196 0.13 +0.3
127,303 + 13564 mRNA_5196 0.20 -0.5
127,305 - 13564 mRNA_5196 0.20 +1.0
127,430 + 13564 mRNA_5196 0.26 +1.7
127,443 + 13564 mRNA_5196 0.26 -0.6
127,443 - 13564 mRNA_5196 0.26 -0.1

Or see this region's nucleotide sequence